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  1. Nov 28, 2023 · The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches.

    • BLAST

      Enter one or more queries in the top text box and one or...

  2. PSI-BLAST allows the user to build a PSSM (position-specific scoring matrix) using the results of the first BlastP run. PHI-BLAST performs the search but limits alignments to those that match a pattern in the query.

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  5. May 3, 2021 · BLAST is a tool for aligning sequences and finding similarities or dissimilarities among various species. Learn about different kinds of BLAST tools, how BLAST algorithm works, and how to use it for DNA and protein queries.

  6. ElasticBLAST is a suite of command line applications that distributes your BLAST searches across multiple instances in the cloud. It can run large numbers of queries faster than BLAST+ on a single machine and manage cloud resources for you.

  7. The program compares nucleotide or protein sequences to sequence in a database and calculates the statistical significance of the matches. This chapter first provides an introduction to BLAST and then describes the practical application of different BLAST programs based on the BLAST Quick Start mini-course (www.ncbi.nlm.nih.gov/Class/minicourses).

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