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The SCOP database, created by manual inspection and abetted by a battery of automated methods, aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between all proteins whose structure is known.
SCOPe (Structural Classification of Proteins — extended) is a database developed at the Berkeley Lab and UC Berkeley to extend the development and maintenance of SCOP. SCOP was conceived at the MRC Laboratory of Molecular Biology, and developed in collaboration with researchers in Berkeley.
For terminal applications, Scoop creates shims, a kind of command-line shortcuts, inside the ~\scoop\shims folder, which is accessible in the PATH. For graphical applications, Scoop creates program shortcuts in a dedicated Start menu folder, called 'Scoop Apps'.
SCOP 1.75 data Starting with SCOPe version 2.01, data from all versions of SCOPe , SCOP , and Astral since 1.55 are stored in a relational database. To download a copy of the MySQL database released with stable SCOPe 2.01 (sql.bz2 format), click here (309.2 MB) .
Jan 1, 2001 · The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of known protein structures. The classification is on hierarchical levels: the first two levels, family and superfamily, describe near and distant evolutionary relationships; the third, fold, describes ...
The Structural Classification of Proteins — extended ( SCOPe) knowledgebase aims to provide an accurate, detailed, and comprehensive description of the structural and evolutionary relationships amongst all proteins of known structure, along with resources for analyzing the protein structures and their sequences.
The Structural Classification of Proteins (SCOP) database is a largely manual classification of protein structural domains based on similarities of their structures and amino acid sequences. A motivation for this classification is to determine the evolutionary relationship between proteins.
