Search results
UCSC Genome Browser is a tool for exploring and analyzing genomic data from various species and assemblies. You can use it to view, align, filter, annotate, and download data from the browser or the REST API.
- Hg38
Hg38 - UCSC Genome Browser Home
- Hg19
Hg19 - UCSC Genome Browser Home
- Home
UCSC Genome Browser. Genome Browser Home; Genomes. Human...
- Genomes
Browse/Select Species. Human. Mouse. Rat. Zebrafish....
- Sessions
Sessions - UCSC Genome Browser Home
- Track Hubs
Track data hubs are collections of external tracks that can...
- Custom Tracks
An annotation data file in one of the supported custom track...
- Human T2T-CHM13/hs1
Human T2T-CHM13/hs1 - UCSC Genome Browser Home
- Hg38
Browse/Select Species. Human. Mouse. Rat. Zebrafish. Fruitfly. Worm. Yeast. Search through thousands of genome browsers.
This page contains links to sequence and annotation downloads for the genome assemblies featured in the UCSC Genome Browser. Downloads are also available via our JSON API, MySQL server, or FTP server. Data filtering is available in the Table Browser or via the command-line utilities.
Welcome to the UCSC Genome Browser website. This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides portals to ENCODE data at UCSC (2003 to 2012) and to the Neandertal project.
- What Does The Genome Browser do?
- Getting Started: Genome Browser Gateway
- Interpreting and Fine-Tuning The Genome Browser Display
- Using Blat Alignments
- Annotation Track Descriptions
- Getting Started on The Table Browser
- Getting Started Using Sessions
- Getting Started on Genome Graphs
- Using The VisiGene Image Browser
- DNA Text Formatting
As vertebrate genome sequences near completion and research re-focuses on their analysis, the issue of effective sequence display becomes critical: it is not helpful to have 3 billion letters of genomic DNA shown as plain text! As an alternative, the UCSC Genome Browser provides a rapid and reliable display of any requested portion of genomes at an...
The UCSC Genome Bioinformatics home page provides access to Genome Browsers on several different genome assemblies. To get started, click the Browser link on the blue sidebar. This will take you to a Gateway page where you can select which genome to display. Note that there are also official mirror sitesin Europe and Asia for users who are geograph...
The Genome Browser annotation tracks page displays a genome location specified through a Gateway search, a BLAT search, or an uploaded custom annotation track. There are five main features on this page: a set of navigation controls, a chromosome ideogram, the annotations tracksimage, display configuration buttons, and a set of track display control...
BLAT (BLAST-Like Alignment Tool) is a very fast sequence alignment tool similar to BLAST. For more information on BLAT's internal scoring schemes and its overall n-mer alignment seed strategy, refer to W. James Kent (2002) BLAT - The BLAST-Like Alignment Tool, Genome Res12:4 656-664. On DNA queries, BLAT is designed to quickly find sequences with 9...
Detailed information about an individual annotation track, including display characteristics, configuration information, and associated database tables, may be obtained from the track description page accessed by clicking the mini-button to the left of the displayed track in the Genome Browser, or by selecting the "Open details..." or "Show details...
The Table Browser provides text-based access to the genome assemblies and annotation data stored in the Genome Browser database. As a flexible alternative to the graphical-based Genome Browser, this tool offers an enhanced level of query support that includes restrictions based on field values, free-form SQL queries, and combined queries on multipl...
The Sessions tool allows users to configure their browsers with specific track combinations, including custom tracks, and save the configurationoptions. Multiple sessions may be saved for future reference, for comparison of scenarios or for sharing with colleagues. Saved sessions will not be expired,however we still recommend that you keep local ba...
The Genome Graphstool can be used to display genome-wide data sets such as the results of genome-wide SNP association studies, linkage studies, and homozygosity mapping. This tool is not pre-loaded with any sample data; instead, you can upload your own data for display by the tool. Once you have uploaded your data, you can view it in a variety of w...
VisiGene is a browser for viewing in situimages. Itenables the user to examine cell-by-cell as well as tissue-by-tissue expression patterns. The browser serves as a virtual microscope, allowing users to retrieve images that meet specific search criteria, then interactively zoom and scroll across the collection. To start the VisiGene browser, click ...
The Genome Browser provides a feature to configure the retrieval, formatting, and coloring of the text used to depict the DNA sequence underlying the features in the displayed annotation tracks window. Retrieval options allow the user to add a padding of extra bases to the upstream or downstream end of the sequence. Formatting options range from si...
The UCSC Genome Browser is an online and downloadable genome browser hosted by the University of California, Santa Cruz (UCSC). [2] [3] [4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms , integrated with a large collection of ...
This site is based on the infrastructure of UCSC Genome Browser, which is developed and maintained by the Genome Bioinformatics Group, a cross-departmental team within the UC Santa Cruz Genomics Institute at the University of California Santa Cruz ( UCSC ).
