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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. B Langmead, C Trapnell, M Pop, SL Salzberg. Genome biology 10, 1-10. , 2009. 23863. 2009. HISAT: a fast spliced aligner with low memory requirements.
Ben Langmead is a computational biologist and associate professor in the Computational Biology & Medicine Group at Johns Hopkins University. [1][2] Education. Langmead gained his Bachelor of Arts degree in computer science from Columbia College, Columbia University in 2003.
Notebook: Global alignment (Python, Py+Colab) Local alignment. Notebook: Local alignment (Python, Py+Colab) Dynamic programming in less time and space. Index-assisted approximate matching and read alignment. Notebook: Index-assisted pigeonhole principle (Python, Py+Colab) Assembly. Assembly & Shortest Common Superstring.
An associate professor of computer science at the Johns Hopkins University and director of the Langmead Lab, Langmead studies and applies ideas from sequence alignment, text indexing, statistics, and high-performance computing to create open-source software and resources for life scientists.
- mailto:blangme2@jhu.edu
- Associate Professor
Mar 27, 2012 · Ben Langmead hopes to be a special kind of translator, one who lets powerful instruments speak to scientists. The throughput of modern sequencing machines and other instruments is astonishing,...
- Monya Baker
Mar 4, 2012 · Abstract. As the rate of sequencing increases, greater throughput is demanded from read aligners. The full-text minute index is often used to make alignment very fast and memory-efficient, but the...
Producer: Macbeth. Bernard Langmead is known for Macbeth (1997).
